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Confocal Microscopes

How Confocal Microscopy Works & How We Save You Time & Money

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Confocal microscopy diagram

Confocal microscopy is an optical technique that uses fluorescence, an excitation light source, and pinhole spatial filters to obtain high-resolution images of biological and non-biological samples.

 Microscope, lens, and sample dish

It is similar to wide-field fluorescence microscopy in that fluorescence optics are used. Unlike traditional fluorescence microscopes, however, confocal microscopy focuses a laser light source onto a defined spot at a specific depth within the sample. This creates the emission of fluorescent light at the exact point defined and, using a pinhole aperture inside the optical pathway, out-of-focus light is removed from the field of view. This leads to much clearer images being produced.

The term Confocal is derived from the conjunction of two focal planes: the objective lens focus point and the focus point where the aperture is placed.

Confocal imaging increases resolution and contrast through the use of the pinhole spatial filters. One pinhole is placed in a conjugate plane with a scanning point on the specimen, and a second pinhole is positioned in front of the detector (e.g., photomultiplier tube).

This effectively removes out-of-focus light and provides a crisper image with the maximal resolution possible for the objective lens being used.

Modern confocal microscopes offer high-power, high-resolution, and multicolor capabilities. They are commonly used to collect high-quality multispectral images of biological and non-biological samples across the visible range. Their maximum magnification level, in general, is 1000x when combining a 10x ocular with a 100x objective lens.

In addition, specialized confocal microscopes can image living cells, and work at very high speeds to perform live-cell imaging without causing severe photo damage, photobleaching, or phototoxicity. Confocal microscopes are even used to assist with in vivo preparations.

Furthermore, modern units are often designed as completely integrated confocal systems. In these systems, an optical microscope works together with a detector or multiple detectors, a computer, multiple laser systems, a wavelength selection device, and beam scanning assembly to produce images and obtain valuable information about a sample. These integrated systems are typically referred to as digital or video imaging systems.

Basic confocal microscopes and more robust systems are used extensively in the life sciences (e.g., biology and cell biology), materials science, and semiconductor inspection. When acquiring one, it’s essential to understand your needs, as this will inform whether or not you’ll want to lease a fully integrated system or something a little less complex.

Confocal Microscopy Techniques, Variations, & Costs

A hand holding a microscope lens with an eye drawn on

Confocal microscopes offers several advantages over conventional optical microscopes (e.g. light microscopes) including shallow depth of field, elimination of out-of-focus glare, and the ability to collect serial optical sections from thick specimens. Optical sectioning provides important structural information regarding both biological or non-biological samples.

Multiple subtypes of confocal microscopes have been developed.

Despite their differences, each subtype relies on fluorescence, or the generation of photons using controlled light sources and fluorophores, to produce an image. We’ll cover some of the subtypes below.

Laser Scanning (CLSM)

Imaging of a sample’s surface provides a lot of information about that object but does not provide a detailed picture of the entire object.

Confocal laser scanning microscopes (CLSM), also known as laser scanning confocal microscopes (LSCM), are able to provide 3D reconstructions of a sample. CLSM adds optical sectioning to standard or wide-field confocal microscopy by allowing for depth selectivity.

This is done by passing the laser beam through a light source aperture that allows for depth selectivity. Multiple depths of the object can then be imaged and each depth’s images can be stitched together to achieve a true 3D rendering of the specimen. This imaging technique is also known as optical sectioning.

Spinning Disc (SDCLM)

Due to the multiple layers that are needed to be imaged in CLSM, it is required that the sample remains still, which is relatively time-consuming. Spinning disk laser confocal laser microscopy (SDCLM) is able to mitigate these shortcomings by using multiple pinholes to project multiple parallel excitation light beams.

These pinholes are arranged on a rotating Nipkow disk that is located within the microscope plane. Due to the spinning of the disk and the multiple pinholes used, images can be captured at a rate of thousands per second.

One disadvantage to this, however, is that due to the holes being larger, the images obtained cannot block out as much background fluorescent light and the result is not as detailed.

Programmable Array Microscope (PAM)

PAM utilizes a similar methodology to SDCLM but is able to have programmable pinholes. It uses a digital micromirror device that is used as a spatial light modulator.

This allows that user to tune their microscope light source to match the specific experimental parameters that they are looking at. The microscope can be changed quickly if the experimental conditions require it.

The major advantages that PAM has over other confocal microscopy techniques are that it is controlled by software, has no moving parts, and offers complete flexibility in its lighting and detection methods.

Serotonin & Decision Making

Serotonin, one of the better-known neurochemicals, contributes to wellbeing and happiness, however, it may also be vital to understanding how our brains function in more extreme conditions.

Recent researchers found that serotonin levels may vary depending on the specific emergency situation that an animal is in. For example, if a mouse is in an exposed field and a hawk is diving down to eat it, the fight-or-flight response kicks in and tells the mouse to run.

If however, that same mouse sees the hawk first and the hawk is unaware of the mouse, the more appropriate response is to freeze. Researchers have found that serotonin neurons trigger escape mechanisms in events of high danger. In lower-danger environments, these same neurons trigger a pausing reaction. If true, this discovery could completely change how we view our brains during these emergency situations.

Observing these types of reactions is not easy and requires highly accurate and powerful microscopes. Confocal laser scanning microscopes aid researchers in imaging and understanding how these neurons are triggered and work.

We Offer Real-Time Confocal Laser Scanning Microscope Leases to Fit Every Need

An animated cylindrical piece of a microscope

Founder-Friendly Leases

Our lease agreements are founder-friendly and flexible, helping you preserve working capital, strengthen the cash flow of your business, and keep business credit lines open for expansions, staffing, and other crucial operational expenses and business development opportunities.

2-5 Year Lease Lengths

Leases range from 2 to 5 years. Length will depend on several factors, including how long you want to use the equipment, equipment type, and your company’s financial position. These are standard factors leasing companies consider and help us tailor a lease agreement to fit your needs.

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We don’t carry an inventory. This means you’re not limited to a specific set of manufacturers. Instead, you can pick the equipment that aligns with your business goals and preferences. We’ll work with the manufacturer of your choice to get the equipment in your facility as quickly as possible.

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Bundle preventive maintenance and repair coverage with your lease agreement. You can spread those payments over time. Easily maintain your equipment, minimize the chances something will break down, repair instrumentation quickly, and simplify your payment processes.

End-of-Lease Options

At the end of your lease, you have multiple options. You can either renew the lease at a significantly lower price, purchase the machine outright based on the fair market value of the original pricing, or call it a day and we’ll come the pick up the equipment for you free of charge.

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Our leases do not include loan-like terms, which can be restrictive or harmful in certain situations. We do not require debt covenants, IP pledges, collateral,  or equity participation. Our goal is to maximize your flexibility. When you lease with us, you’re collaborating with a true business partner.

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Our underwriting is done in-house. You can expect quicker turnaround, allowing you respond to your equipment needs as they arise. We require less documentation than traditional lenders and financiers and can get the equipment you need in operation more quickly.